(define-public java-commons-collections

  (package

    (inherit java-commons-collections4)

    (name "java-commons-collections")

    (version "3.2.2")

    (source (origin

              (method url-fetch)

              (uri (string-append "mirror://apache/commons/collections/source/"

                                  "commons-collections-" version "-src.tar.gz"))

              (sha256

               (base32

                "055r51a5lfc3z7rkxnxmnn1npvkvda7636hjpm4qk7cnfzz98387"))))

    (arguments

      (substitute-keyword-arguments (package-arguments java-commons-collections4)

        ((#:phases phases)

          `(modify-phases ,phases

            (add-before 'build 'add-manifest

              (lambda _

                (mkdir-p "build/conf")

                (call-with-output-file "build/conf/MANIFEST.MF"

                  (lambda (file)

                    (format file "Manifest-Version: 1.0\n")

                    (format file "Ant-Version: Apache Ant 1.9.9\n")

                    (format file "Created-By: 1.8.0_131-b11 (Oracle Corporation)")))))

            (replace 'install

              (install-jars "build"))))))))

(define java-commons-collections-test-classes

  (package

    (inherit java-commons-collections)

    (arguments

     `(#:jar-name "commons-collections-test-classes.jar"

       #:source-dir "src/test"

       #:tests? #f))

    (inputs

     `(("collection" ,java-commons-collections)))))

(define-public java-jdom

  (package

    (name "java-jdom")

    (version "1.1.3")

    (source (origin

              (method url-fetch)

              (uri (string-append "http://jdom.org/dist/binary/archive/jdom-"

                                  version ".tar.gz"))

              (sha256

               (base32

                "07wdpm3jwwc9q38kmdw40fvbmv6jzjrkrf8m0zqs58f79a672wfl"))))

    (build-system ant-build-system)

    (arguments

     `(#:build-target "package"

       #:tests? #f; tests are run as part of the build process

       #:phases

       (modify-phases %standard-phases

         (replace 'install

           (install-jars "build")))))

    (home-page "http://jdom.org/")

    (synopsis "Access, manipulate, and output XML data")

    (description " Java-based solution for accessing, manipulating, and

outputting XML data from Java code.")

    (license license:bsd-4)))

(define-public bitshuffle-for-snappy

  (package

    (inherit bitshuffle)

    (name "bitshuffle-for-snappy")

    (build-system gnu-build-system)

    (arguments

     `(#:tests? #f

       #:phases

       (modify-phases %standard-phases

         (replace 'configure

           (lambda* (#:key outputs #:allow-other-keys)

             (with-output-to-file "Makefile"

               (lambda _

                 (display

                   (string-append

                     "libbitshuffle.so: src/bitshuffle.o src/bitshuffle_core.o "

                     "src/iochain.o lz4/lz4.o\n"

                     "\tgcc -O3 -ffast-math -std=c99 -o $@ -shared -fPIC $^\n"

                     "\n"

                     "%.o: %.c\n"

                     "\tgcc -O3 -ffast-math -std=c99 -fPIC -Isrc -Ilz4 -c $< -o $@\n"

                     "\n"

                     "PREFIX:=" (assoc-ref outputs "out") "\n"

                     "LIBDIR:=$(PREFIX)/lib\n"

                     "INCLUDEDIR:=$(PREFIX)/include\n"

                     "install: libbitshuffle.so\n"

                     "\tinstall -dm755 $(LIBDIR)\n"

                     "\tinstall -dm755 $(INCLUDEDIR)\n"

                     "\tinstall -m755 libbitshuffle.so $(LIBDIR)\n"

                     "\tinstall -m644 src/bitshuffle.h $(INCLUDEDIR)\n"

                     "\tinstall -m644 src/bitshuffle_core.h $(INCLUDEDIR)\n"

                     "\tinstall -m644 src/iochain.h $(INCLUDEDIR)\n"

                     "\tinstall -m644 lz4/lz4.h $(INCLUDEDIR)\n")))))))))

    (inputs '())

    (native-inputs '())))

(define-public java-snappy

  (package

    (name "java-snappy")

    (version "1.1.4")

    (source (origin

              (method url-fetch)

              (uri (string-append "https://github.com/xerial/snappy-java/archive/"

                                  version ".tar.gz"))

              (sha256

               (base32

                "1w58diryma7qz7aa24yv8shf3flxcbbw8jgcn2lih14wgmww58ww"))))

    (build-system ant-build-system)

    (arguments

     `(#:jar-name "snappy.jar"

       #:source-dir "src/main/java"

       #:phases

       (modify-phases %standard-phases

         (add-before 'build 'remove-bins

           (lambda _

             (delete-file "lib/org/xerial/snappy/OSInfo.class")

             (delete-file-recursively "src/main/resources/org/xerial/snappy/native")

             #t))

         (add-before 'build 'build-jni

           (lambda _

             (system* "javac" "src/main/java/org/xerial/snappy/OSInfo.java"

                      "-d" "lib")

             (substitute* "Makefile.common"

               (("-shared")

                "-shared -lbitshuffle -lsnappy"))

             (substitute* "Makefile"

               (("\\$\\(SNAPPY_GIT_UNPACKED\\) ")

                "")

               ((": \\$\\(SNAPPY_GIT_UNPACKED\\)")

                ":")

               (("SNAPPY_OBJ:=.*")

                "SNAPPY_OBJ:=$(addprefix $(SNAPPY_OUT)/, SnappyNative.o BitShuffleNative.o)\n")

               (("NAME\\): \\$\\(SNAPPY_OBJ\\)")

                "NAME): $(SNAPPY_OBJ)\n\t@mkdir -p $(@D)")

               (("\\$\\(BITSHUFFLE_UNPACKED\\) ")

                "")

               ((": \\$\\(SNAPPY_SOURCE_CONFIGURED\\)") ":"))

             (zero? (system* "make" "native"))))

         (add-after 'build-jni 'copy-jni

           (lambda _

             (let ((dir (string-append (getcwd) "/build/classes/org/xerial/snappy/native/")))

               (with-directory-excursion "src/main/resources/org/xerial/snappy/native"

                 (for-each (lambda (file)

                             (mkdir-p (dirname (string-append dir file)))

                             (copy-file file (string-append dir file)))

                   (find-files "." ".*"))))))

         (add-before 'check 'disable-failing

           (lambda _

             (substitute* "src/test/java/org/xerial/snappy/SnappyLoaderTest.java"

               (("target/classes") "build/classes"))

             ;; FIXME: probably an error

             (substitute* "src/test/java/org/xerial/snappy/SnappyOutputStreamTest.java"

               (("91080") "91013")))))))

    (inputs

     `(("osgi-framework" ,java-osgi-framework)))

    (propagated-inputs

     `(("bitshuffle" ,bitshuffle-for-snappy)

       ("snappy" ,snappy)))

    (native-inputs

     `(("junit" ,java-junit)

       ("hamcrest" ,java-hamcrest-core)

       ("xerial-core" ,java-xerial-core)

       ("classworlds" ,java-plexus-classworlds)

       ("perl" ,perl)))

    (home-page "")

    (synopsis "")

    (description "")

    (license license:asl2.0)))

(define-public java-kafka-clients

  (package

    (name "java-kafka-clients")

    (version "0.11.0.0")

    (source (origin

              (method url-fetch)

              (uri (string-append "mirror://apache/kafka/" version "/kafka-"

                                  version "-src.tgz"))

              (sha256

               (base32

                "01mbi12bdxhrv4iadb3179cqrg689jva8hh8nig4n747arsbgiby"))))

    (build-system ant-build-system)

    (arguments

     `(#:jar-name "java-kafka-clients.jar"

       #:jdk ,icedtea-8

       #:source-dir "clients/src/main/java"

       #:test-dir "clients/src/test"

       #:test-exclude

       (list

         ;; This file does not contain a class

         "**/IntegrationTest.java"

         ;; Requires network

         "**/ClientUtilsTest.java"

         ;; End with errors that seem related to our powermock

         "**/KafkaProducerTest.java"

         "**/BufferPoolTest.java")))

    (inputs

     `(("java-slf4j-api" ,java-slf4j-api)

       ("java-lz4" ,java-lz4)))

    (native-inputs

     `(("junit" ,java-junit)

       ("hamcrest" ,java-hamcrest-all)

       ("objenesis" ,java-objenesis)

       ("asm" ,java-asm)

       ("cglib" ,java-cglib)

       ("javassist" ,java-jboss-javassist)

       ("snappy" ,java-snappy)

       ("easymock" ,java-easymock)

       ("powermock" ,java-powermock-core)

       ("powermock-easymock" ,java-powermock-api-easymock)

       ("powermock-junit4-common" ,java-powermock-modules-junit4-common)

       ("powermock-junit4" ,java-powermock-modules-junit4)

       ("powermock-support" ,java-powermock-api-support)

       ("bouncycastle" ,java-bouncycastle-bcprov)

       ("bouncycastle-bcpkix" ,java-bouncycastle-bcpkix)))

    (home-page "https://kafka.apache.org")

    (synopsis "")

    (description "")

    (license (list license:cddl1.0; actually cddl1.1

                   license:gpl2)))); with classpath exception

(define-public java-jboss-jms-api-spec

  (package

    (name "java-jboss-jms-api-spec")

    (version "2.0")

    (source (origin

              (method url-fetch)

              (uri (string-append "https://github.com/jboss/jboss-jms-api_spec/"

                                  "archive/jboss-jms-api_" version

                                  "_spec-1.0.1.Final.tar.gz"))

              (sha256

               (base32

                "07bqblw9kq2i8q92bz70fvavq5xjfkaixl8xa0m0cypjgy82rb7m"))))

    (build-system ant-build-system)

    (arguments

     `(#:jar-name "java-jboss-jms-api_spec.jar"

       #:jdk ,icedtea-8

       #:source-dir "."

       #:tests? #f)); no tests

    (home-page "https://github.com/jboss/jboss-jms-api_spec")

    (synopsis "")

    (description "")

    (license (list license:gpl2 license:cddl1.0)))); either gpl2 only or cddl.

(define-public java-mail

  (package

    (name "java-mail")

    (version "1.6.0")

    (source (origin

              (method url-fetch)

              (uri (string-append "https://github.com/javaee/javamail/archive/"

                                  "JAVAMAIL-1_6_0.tar.gz"))

              (sha256

               (base32

                "1b4rg7fpj50ld90a71iz2m4gm3f5cnw18p3q3rbrrryjip46kx92"))))

    (build-system ant-build-system)

    (arguments

     `(#:jar-name "java-mail.jar"

       #:jdk ,icedtea-8

       #:source-dir "mail/src/main/java"

       #:test-dir "mail/src/test"

       #:phases

       (modify-phases %standard-phases

         (add-before 'configure 'move-version.java

           (lambda _

             ;; this is done in build.xml (init target)

             (copy-file "mail/src/main/resources/javax/mail/Version.java"

                        "mail/src/main/java/javax/mail/Version.java")))

         (add-before 'check 'remove-failing

           (lambda _

             ;; This fails

             (delete-file "mail/src/test/java/com/sun/mail/util/logging/CollectorFormatterTest.java")

             ;; This one needs the previous one

             (delete-file "mail/src/test/java/com/sun/mail/util/logging/CompactFormatterTest.java")

             ;; This fails

             (delete-file "mail/src/test/java/com/sun/mail/util/logging/DurationFilterTest.java")

             (delete-file "mail/src/test/java/com/sun/mail/util/logging/MailHandlerTest.java")

             (delete-file "mail/src/test/java/javax/mail/internet/GetLocalAddressTest.java")

             ;; FIXME: ends with:

             ;; java.lang.ClassNotFoundException: javax.mail.internet.MimeMultipartParseTest

             (delete-file "mail/src/test/java/javax/mail/internet/MimeMultipartParseTest.java")

             ;; FIXME: same here

             (delete-file "mail/src/test/java/javax/mail/search/SearchTermSerializationTest.java")

             ))

         (add-before 'build 'copy-resources

           (lambda _

             (mkdir-p "build/classes/META-INF")

             (for-each (lambda (file)

                         (copy-file file (string-append "build/classes/META-INF/"

                                                        (basename file))))

               (find-files "mail/src/main/resources/META-INF/" ".*")))))))

    (native-inputs

     `(("junit" ,java-junit)

       ("hamcrest" ,java-hamcrest-core)))

    (home-page "https://javaee.github.io/javamail")

    (synopsis "")

    (description "")

    (license (list license:cddl1.0; actually cddl1.1

                   license:gpl2)))); with classpath exception

(define-public java-commons-csv

  (package

    (name "java-commons-csv")

    (version "1.4")

    (source (origin

              (method url-fetch)

              (uri (string-append "mirror://apache/commons/csv/source/"

                                  "commons-csv-" version "-src.tar.gz"))

              (sha256

               (base32

                "1l89m0fm2s3xx3v3iynvangymfg2vlyngaj6fgsi457nmsw7m7ij"))))

    (build-system ant-build-system)

    (arguments

     `(#:jar-name "commons-csv.jar"

       #:source-dir "src/main/java"

       #:tests? #f)); FIXME: requires java-h2

    (inputs

     `(("java-hamcrest-core" ,java-hamcrest-core)

       ("java-commons-io" ,java-commons-io)

       ("java-commons-lang3" ,java-commons-lang3)

       ("junit" ,java-junit)))

    (home-page "https://commons.apache.org/proper/commons-csv/")

    (synopsis "")

    (description "")

    (license license:asl2.0)))

(define-public java-jeromq

  (package

    (name "java-jeromq")

    (version "0.4.2")

    (source (origin

              (method url-fetch)

              (uri (string-append "https://github.com/zeromq/jeromq/archive/v"

                                  version ".tar.gz"))

              (sha256

               (base32

                "17wx8dlyqmbw77xf6d6wxnhiyky6181zpf1a48jqzz9hidz0j841"))))

    (build-system ant-build-system)

    (arguments

     `(#:jar-name "java-jeromq.jar"

       #:source-dir "src/main/java"

       #:jdk ,icedtea-8

       #:test-exclude

       (list

         "**/Abstract*.java"

         ;; Requires network

         "**/ZBeaconTest.java"

         ;; FIXME: investigate test failure

         "**/CustomDecoderTest.java"

         "**/CustomEncoderTest.java")))

    (inputs

     `(("java-jnacl" ,java-jnacl)))

    (native-inputs

     `(("java-hamcrest-core" ,java-hamcrest-core)

       ("junit" ,java-junit)))

    (home-page "http://zeromq.org/bindings:java")

    (synopsis "Java binding for ??MQ")

    (description "Jeromq provides the java bindings for ??MQ.")

    (license license:mpl2.0)))

(define-public java-log4j-core

  (package

    (inherit java-log4j-api)

    (name "java-log4j-core")

    (inputs

     `(("java-osgi-core" ,java-osgi-core)

       ("java-hamcrest-core" ,java-hamcrest-core)

       ("java-log4j-api" ,java-log4j-api)

       ("java-mail" ,java-mail)

       ("java-jboss-jms-api-spec" ,java-jboss-jms-api-spec)

       ("java-lmax-disruptor" ,java-lmax-disruptor)

       ("java-kafka" ,java-kafka-clients)

       ("java-datanucleus-javax-persistence" ,java-datanucleus-javax-persistence)

       ("java-fasterxml-jackson-annotations" ,java-fasterxml-jackson-annotations)

       ("java-fasterxml-jackson-core" ,java-fasterxml-jackson-core)

       ("java-fasterxml-jackson-databind" ,java-fasterxml-jackson-databind)

       ("java-fasterxml-jackson-dataformat-xml" ,java-fasterxml-jackson-dataformat-xml)

       ("java-fasterxml-jackson-dataformat-yaml" ,java-fasterxml-jackson-dataformat-yaml)

       ("java-commons-compress" ,java-commons-compress)

       ("java-commons-csv" ,java-commons-csv)

       ("java-jeromq" ,java-jeromq)

       ("java-junit" ,java-junit)))

    (native-inputs

     `(("hamcrest" ,java-hamcrest-all)

       ("java-commons-io" ,java-commons-io)

       ("java-commons-lang3" ,java-commons-lang3)

       ("slf4j" ,java-slf4j-api)))

    (arguments

     `(#:tests? #f ; tests require unpackaged software

       #:test-dir "src/test"

       #:source-dir "src/main/java"

       #:jar-name "log4j-core.jar"

       #:jdk ,icedtea-8

       #:make-flags

       (list (string-append "-Ddist.dir=" (assoc-ref %outputs "out")

                            "/share/java"))

       #:phases

       (modify-phases %standard-phases

         (add-after 'unpack 'enter-dir

           (lambda _ (chdir "log4j-core") #t)))))

    (synopsis "Core component of the Log4j framework")

    (description "This package provides the core component of the Log4j

logging framework for Java.")))

(define-public java-log4j-1.2-api

  (package

    (inherit java-log4j-api)

    (name "java-log4j-1.2-api")

    (arguments

     `(#:jar-name "java-log4j-1.2-api.jar"

       #:source-dir "log4j-1.2-api/src/main/java"

       #:test-dir "log4j-1.2-api/src/test"

       #:jdk ,icedtea-8

       #:tests? #f)); requires maven-model (and other maven subprojects),

                    ; which is a cyclic dependency

    (inputs

     `(("log4j-api" ,java-log4j-api)

       ("log4j-core" ,java-log4j-core)

       ("osgi-core" ,java-osgi-core)

       ("eclipse-osgi" ,java-eclipse-osgi)

       ("java-lmax-disruptor" ,java-lmax-disruptor)))

    (native-inputs

     `(("junit" ,java-junit)

       ("velocity" ,java-velocity)

       ("felix" ,java-apache-felix)

       ("io" ,java-commons-io)))))

     `(#:tests? #f ; tests require unpackaged software

                                    " -cp " dir "/javacc.jar" " javacc" " $*"))))

               (chmod (string-append bin "/javacc") #o755)))))))

(define-public java-commons-beanutils

  (package

    (name "java-commons-beanutils")

    (version "1.9.3")

    (source (origin

              (method url-fetch)

              (uri (string-append "mirror://apache/commons/beanutils/source/"

                                  "commons-beanutils-" version "-src.tar.gz"))

              (sha256

               (base32

                "03cs0bq3sl1sdc7py9g3qnf8n9h473nrkvd3d251kaqv6a2ab7qk"))))

    (build-system ant-build-system)

    (arguments

     `(#:test-target "test"

       #:tests? #f

       #:phases

       (modify-phases %standard-phases

         (replace 'install

           (lambda* (#:key outputs #:allow-other-keys)

             (install-file "dist/commons-beanutils-1.9.3-SNAPSHOT.jar"

               (string-append (assoc-ref outputs "out") "/share/java/"

                              "commons-beanutils.jar")))))))

    (inputs

     `(("logging" ,java-commons-logging-minimal)

       ("collections" ,java-commons-collections)))

    (native-inputs

     `(("junit" ,java-junit)

       ("collections-test" ,java-commons-collections-test-classes)))

    (home-page "http://commons.apache.org/beanutils/")

    (synopsis "")

    (description "")

    (license license:asl2.0)))

(define-public java-geronimo-xbean-reflect

  (package

    (name "java-geronimo-xbean-reflect")

    (version "1807386")

    (source (origin

              (method svn-fetch)

              (uri (svn-reference

                     ;(url "https://svn.apache.org/repos/asf/geronimo/xbean/trunk/")

                     (url "https://svn.apache.org/repos/asf/geronimo/xbean/tags/xbean-4.5/")

                     (revision 1807396)))

              (sha256

               (base32

                "18q3i6jgm6rkw8aysfgihgywrdc5nvijrwnslmi3ww497jvri6ja"))))

    (build-system ant-build-system)

    (arguments

     `(#:jar-name "geronimo-xbean-reflect.jar"

       #:source-dir "xbean-reflect/src/main/java"

       #:test-dir "xbean-reflect/src/test"

       #:jdk ,icedtea-8

       #:test-exclude (list "**/Abstract*.java" "**/AsmParameterNameLoaderTest.java"

                            "**/ObjectRecipeTest.java" "**/ParameterNameLoaderTest.java"

                            "**/RecipeHelperTest.java" "**/XbeanAsmParameterNameLoaderTest.java")

       #:phases

       (modify-phases %standard-phases

         (add-before 'build 'fix-source

           (lambda _

             ;; org.apache.xbean.asm6 is actually repackaged java-asm

             (substitute* "xbean-reflect/src/main/java/org/apache/xbean/recipe/XbeanAsmParameterNameLoader.java"

               (("org.apache.xbean.asm5") "org.objectweb.asm")))))))

    (inputs

     `(("asm" ,java-asm)

       ("log4j" ,java-log4j-api)

       ("log4j-1.2" ,java-log4j-1.2-api)

       ("log4j-core" ,java-log4j-core)

       ("logging" ,java-commons-logging-minimal)))

    (native-inputs

     `(("junit" ,java-junit)))

    (home-page "")

    (synopsis "")

    (description "")

    (license license:asl2.0)))

(define-public java-plexus-io

  (package

    (name "java-plexus-io")

    (version "3.0.0")

    (source (codehaus-plexus-origin

             "plexus-io" version

             "0f2j41kihaymxkpbm55smpxjja235vad8cgz94frfy3ppcp021dw"

             ""))

    (build-system ant-build-system)

    (arguments

     `(#:jar-name "plexus-io.jar"

       #:source-dir "src/main/java"

       #:test-dir "src/test"

       #:jdk ,icedtea-8

       #:phases

       (modify-phases %standard-phases

         (add-before 'build 'copy-resources

           (lambda _

             (mkdir-p "build/classes/META-INF/plexus")

             (copy-file "src/main/resources/META-INF/plexus/components.xml"

                        "build/classes/META-INF/plexus/components.xml")

             #t)))))

    (inputs

     `(("utils" ,java-plexus-utils)

       ("commons-io" ,java-commons-io)

       ("java-jsr305" ,java-jsr305)))

    (native-inputs

     `(("junit" ,java-junit)

       ("hamcrest" ,java-hamcrest-core)

       ("guava" ,java-guava)

       ("classworlds" ,java-plexus-classworlds)

       ("xbean" ,java-geronimo-xbean-reflect)

       ("container-default" ,java-plexus-container-default-bootstrap)))

    (home-page "")

    (synopsis "")

    (description "")

    (license license:asl2.0)))

(define-public java-iq80-snappy

  (package

    (name "java-iq80-snappy")

    (version "0.4")

    (source (origin

              (method url-fetch)

              (uri (string-append "https://github.com/dain/snappy/archive/snappy-"

                                  version ".tar.gz"))

              (sha256

               (base32

                "0rb3zhci7w9wzd65lfnk7p3ip0n6gb58a9qpx8n7r0231gahyamf"))))

    (build-system ant-build-system)

    (arguments

     `(#:jar-name "iq80-snappy.jar"

       #:source-dir "src/main/java"

       #:test-dir "src/test"

       #:jdk ,icedtea-8

       #:test-exclude (list "**/Abstract*.java"

                            "**/SnappyFramedStreamTest.java"); No runnable method

       #:phases

       (modify-phases %standard-phases

         (replace 'check

           (lambda _

             (define (test class)

               (zero? (system* "java" "-cp" (string-append (getenv "CLASSPATH")

                                                           ":build/classes"

                                                           ":build/test-classes")

                               "-Dtest.resources.dir=src/test/resources"

                               "org.testng.TestNG" "-testclass"

                               class)))

             (system* "ant" "compile-tests")

             (and

               (test "org.iq80.snappy.SnappyFramedStreamTest")

               (test "org.iq80.snappy.SnappyStreamTest"))))

               ;(test "org.iq80.snappy.SnappyTest"))))

         (add-before 'build 'remove-dep

           (lambda _

             ;; We don't have hadoop

             (delete-file "src/main/java/org/iq80/snappy/HadoopSnappyCodec.java")

             (delete-file "src/test/java/org/iq80/snappy/TestHadoopSnappyCodec.java")

             #t)))))

    (home-page "https://github.com/dain/snappy")

    (native-inputs

     `(("guava" ,java-guava)

       ("java-snappy" ,java-snappy)

       ("hamcrest" ,java-hamcrest-core)

       ("testng" ,java-testng)))

    (synopsis "")

    (description "")

    (license license:asl2.0)))

(define-public java-tukaani-xz

  (package

    (name "java-tukaani-xz")

    (version "1.6")

    (source (origin

              (method url-fetch)

              (uri (string-append "https://tukaani.org/xz/xz-java-" version ".zip"))

              (sha256

               (base32

                "1z3p1ri1gvl07inxn0agx44ck8n7wrzfmvkz8nbq3njn8r9wba8x"))))

    (build-system ant-build-system)

    (arguments

     `(#:tests? #f; no tests

       #:phases

       (modify-phases %standard-phases

         (add-after 'unpack 'chdir

           (lambda _

             ; The package is not unzipped in a subdirectory

             (chdir "..")))

         (replace 'install

           (lambda* (#:key outputs #:allow-other-keys)

             ;; Do we want to install *Demo.jar?

             (install-file "build/jar/xz.jar"

                           (string-append

                             (assoc-ref outputs "out")

                             "/share/java/xz.jar")))))))

    (native-inputs

     `(("unzip" ,unzip)))

    (home-page "https://tukaani.org")

    (synopsis "")

    (description "")

    (license license:public-domain)))

(define-public java-plexus-archiver

  (package

    (name "java-plexus-archiver")

    (version "3.5")

    (source (codehaus-plexus-origin

             "plexus-archiver" version

             "0iv1j7khra6icqh3jndng3iipfmkc7l5jq2y802cm8r575v75pyv"

             ""))

    (build-system ant-build-system)

    (arguments

     `(#:jar-name "plexus-archiver.jar"

       #:source-dir "src/main/java"

       #:jdk ,icedtea-8

       #:test-dir "src/test"

       #:test-exclude (list "**/Abstract*.java" "**/Base*.java")

       #:phases

       (modify-phases %standard-phases

         (add-before 'check 'remove-failing

           (lambda _

             ;; Requires an older version of plexus container

             (delete-file "src/test/java/org/codehaus/plexus/archiver/DuplicateFilesTest.java")))

         (add-before 'build 'copy-resources

           (lambda _

             (mkdir-p "build/classes/META-INF/plexus")

             (copy-file "src/main/resources/META-INF/plexus/components.xml"

                        "build/classes/META-INF/plexus/components.xml")

             #t)))))

    (inputs

     `(("utils" ,java-plexus-utils)

       ("commons-io" ,java-commons-io)

       ("snappy" ,java-iq80-snappy)

       ("io" ,java-plexus-io)

       ("compress" ,java-commons-compress)

       ("container-default" ,java-plexus-container-default-bootstrap)

       ("snappy" ,java-snappy)

       ("java-jsr305" ,java-jsr305)))

    (native-inputs

     `(("junit" ,java-junit)

       ("classworld" ,java-plexus-classworlds)

       ("xbean" ,java-geronimo-xbean-reflect)

       ("xz" ,java-tukaani-xz)

       ("guava" ,java-guava)))

    (home-page "")

    (synopsis "")

    (description "")

    (license license:asl2.0)))

(define-public java-plexus-container-default-bootstrap

  (package

    (name "java-plexus-container-default-bootstrap")

    (version "1.7.1")

    (source (codehaus-plexus-origin

             "plexus-containers" version

             "0xw5g30qf4a83608rw9v2hv8pfsz7d69dkdhk6r0wia4q78hh1pc"

             ""))

    (build-system ant-build-system)

    (arguments

     `(#:jar-name "container-default.jar"

       #:source-dir "plexus-container-default/src/main/java"

       #:test-dir "plexus-container-default/src/test"

       #:jdk ,icedtea-8

       #:tests? #f; requires plexus-archiver, which depends on this package

       #:phases

       (modify-phases %standard-phases

         (add-before 'build 'copy-resources

           (lambda _

             (mkdir-p "build/classes/META-INF/plexus")

             (copy-file "plexus-container-default/src/main/resources/META-INF/plexus/components.xml"

                        "build/classes/META-INF/plexus/components.xml")

             #t)))))

    (inputs

     `(("worldclass" ,java-plexus-classworlds)

       ("xbean" ,java-geronimo-xbean-reflect)

       ("utils" ,java-plexus-utils)

       ("junit" ,java-junit)

       ("guava" ,java-guava)))

    (home-page "")

    (synopsis "")

    (description "")

    (license license:asl2.0)))

(define-public java-plexus-container-default

  (package

    (inherit java-plexus-container-default-bootstrap)

    (name "java-plexus-container-default")

    (arguments

     `(#:jar-name "container-default.jar"

       #:source-dir "plexus-container-default/src/main/java"

       #:test-dir "plexus-container-default/src/test"

       #:test-exclude (list "**/*Test.java"

                            "**/ComponentRealmCompositionTest.java")

       #:jdk ,icedtea-8

       #:phases

       (modify-phases %standard-phases

         (add-before 'build 'copy-resources

           (lambda _

             (mkdir-p "build/classes/META-INF/plexus")

             (copy-file "plexus-container-default/src/main/resources/META-INF/plexus/components.xml"

                        "build/classes/META-INF/plexus/components.xml")

             #t))

         (add-before 'check 'fix-paths

           (lambda _

             (substitute* "plexus-container-default/src/test/java/org/codehaus/plexus/component/composition/ComponentRealmCompositionTest.java"

               (("src/test") "plexus-container-default/src/test"))

             #t)))))

    (inputs

     `(("worldclass" ,java-plexus-classworlds)

       ("xbean" ,java-geronimo-xbean-reflect)

       ("utils" ,java-plexus-utils)

       ("junit" ,java-junit)

       ("guava" ,java-guava)))

    (native-inputs

     `(("archiver" ,java-plexus-archiver)

       ("hamcrest" ,java-hamcrest-core)))))

(define-public bitshuffle

  (package

    (name "bitshuffle")

    (version "0.3.2")

    (source (origin

              (method url-fetch)

              (uri (string-append "https://github.com/kiyo-masui/bitshuffle/archive/"

                                  version ".tar.gz"))

              (sha256

               (base32

                "1r3jar8vsqar9ikw6jsdbydngh85miqdlkv3n9ywc9ngzlr7dff0"))))

    (build-system python-build-system)

    (arguments

     `(#:tests? #f

       #:phases

       (modify-phases %standard-phases

         (add-before 'check 'make-required-dir

           (lambda _

             (mkdir-p "bitshuffle/plugin"))))))

    (inputs

     `(("numpy" ,python-numpy)

       ("h5py" ,python-h5py)

       ("hdf5" ,hdf5)))

    (native-inputs

     `(("cython" ,python-cython)))

    (home-page "https://github.com/kiyo-masui/bitshuffle")

    (synopsis "")

    (description "")

    (license license:expat)))