;;; GNU Guix --- Functional package management for GNU

;;; Copyright © 2017 Julien Lepiller <julien@lepiller.eu>

;;;

;;; This file is part of GNU Guix.

;;;

;;; GNU Guix is free software; you can redistribute it and/or modify it

;;; under the terms of the GNU General Public License as published by

;;; the Free Software Foundation; either version 3 of the License, or (at

;;; your option) any later version.

;;;

;;; GNU Guix is distributed in the hope that it will be useful, but

;;; WITHOUT ANY WARRANTY; without even the implied warranty of

;;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the

;;; GNU General Public License for more details.

;;;

;;; You should have received a copy of the GNU General Public License

;;; along with GNU Guix.  If not, see <http://www.gnu.org/licenses/>.

(define-module (more packages ocaml)

  #:use-module (guix packages)

  #:use-module (guix download)

  #:use-module (guix git-download)

  #:use-module (guix utils)

  #:use-module (guix build-system gnu)

  #:use-module (guix build-system ocaml)

  #:use-module ((guix licenses) #:prefix license:)

  #:use-module (gnu packages)

  #:use-module (gnu packages assembly)

  #:use-module (gnu packages base)

  #:use-module (gnu packages bison)

  #:use-module (gnu packages boost)

  #:use-module (gnu packages emacs)

  #:use-module (gnu packages flex)

  #:use-module (gnu packages llvm)

  #:use-module (gnu packages m4)

  #:use-module (gnu packages maths)

  #:use-module (gnu packages multiprecision)

  #:use-module (gnu packages ocaml)

  #:use-module (gnu packages perl)

  #:use-module (gnu packages pkg-config)

  #:use-module (gnu packages protobuf)

  #:use-module (gnu packages python)

  #:use-module (gnu packages tex)

  #:use-module (gnu packages texinfo)

  #:use-module (more packages smt))

;; Janestreet packages are found in a similar way and all need the same patch.

(define (janestreet-origin name version hash)

  (origin (method url-fetch)

          (uri (string-append "https://ocaml.janestreet.com/ocaml-core/"

                              (version-major+minor version) "/files/"

                              name "-" version ".tar.gz"))

          (sha256 (base32 hash))

          (modules '((guix build utils)))

          (snippet

           (let ((pattern (string-append "lib/" name)))

             `(begin

                ;; install.ml contains an invalid reference to the ppx file and

                ;; propagates this error to the generated META file.  It

                ;; looks for it in the "lib" directory, but it is installed in

                ;; "lib/ocaml/site-lib/package".  This substitute does not change

                ;; this file for non ppx packages.

                (substitute* "install.ml"

                  ((,pattern) (string-append "lib/ocaml/site-lib/" ,name)))

                ;; The standard Makefile would try to install janestreet modules

                ;; in OCaml's directory in the store, which is read-only.

                (substitute* "Makefile"

                  (("--prefix")

                   "--libdir $(LIBDIR) --prefix")))))))

;; They also require almost the same set of arguments

(define janestreet-arguments

  `(#:use-make? #t

    #:make-flags

    (list (string-append "CONFIGUREFLAGS=--prefix "

                         (assoc-ref %outputs "out")

                         " --enable-tests")

          (string-append "LIBDIR="

                         (assoc-ref %outputs "out")

                         "/lib/ocaml/site-lib")

          ;; for ocaml-bin-prot, otherwise ignored

          (string-append "OCAML_TOPLEVEL_PATH="

                         (assoc-ref %build-inputs "findlib")

                         "/lib/ocaml/site-lib"))

    #:phases (modify-phases %standard-phases (delete 'configure))))

(define-public ocaml-fix

  (package

    (inherit ocaml)

    (version "4.05.0")

    (source (origin

              (method url-fetch)

              (uri (string-append

                    "http://caml.inria.fr/pub/distrib/ocaml-"

                    (version-major+minor version)

                    "/ocaml-" version ".tar.xz"))

              (sha256

               (base32

                "1y9fw1ci9pwnbbrr9nwr8cq8vypcxwdf4akvxard3mxl2jx2g984"))))

    (arguments

     `(#:modules ((guix build gnu-build-system)

                  (guix build utils)

                  (web server))

       #:phases

       (modify-phases %standard-phases

         (add-after 'unpack 'patch-/bin/sh-references

           (lambda* (#:key inputs #:allow-other-keys)

             (let* ((sh (string-append (assoc-ref inputs "bash")

                                       "/bin/sh"))

                    (quoted-sh (string-append "\"" sh "\"")))

               (with-fluids ((%default-port-encoding #f))

                 (for-each

                  (lambda (file)

                    (substitute* file

                      (("\"/bin/sh\"")

                       (begin

                         (format (current-error-port) "\

patch-/bin/sh-references: ~a: changing `\"/bin/sh\"' to `~a'~%"

                                 file quoted-sh)

                         quoted-sh))))

                  (find-files "." "\\.ml$"))

                 #t))))

         (replace 'configure

           (lambda* (#:key outputs #:allow-other-keys)

             (let* ((out (assoc-ref outputs "out"))

                    (mandir (string-append out "/share/man")))

               ;; Custom configure script doesn't recognize

               ;; --prefix=<PREFIX> syntax (with equals sign).

               (zero? (system* "./configure"

                               "--prefix" out

                               "--mandir" mandir)))))

         (replace 'build

           (lambda _

             (zero? (system* "make" "-j1" ;; fails to build otherwise

                             "world.opt"))))

         (delete 'check)

         (add-after 'install 'check

           (lambda _

             (with-directory-excursion "testsuite"

               (zero? (system* "make" "all"))))))))))

(define-public ocaml-zed

  (package

    (name "ocaml-zed")

    (version "1.4")

    (source (origin

              (method url-fetch)

              (uri (string-append "https://github.com/diml/zed/archive/"

                                  version ".tar.gz"))

              (sha256

               (base32

                "0pvfq9ikhbkv4ksn3k3vzs6wiwkihjav3n81lhxm54z9931gfwnz"))))

    (build-system ocaml-build-system)

    (propagated-inputs

     `(("camomile" ,ocaml-camomile)

       ("react" ,ocaml-react)))

    (home-page "https://github.com/diml/zed")

    (synopsis "Abstract engine for text edition in OCaml")

    (description "Zed is an abstract engine for text edition. It can be used to

write text editors, edition widgets, readlines, ...

Zed uses Camomile to fully support the Unicode specification, and implements an

UTF-8 encoded string type with validation, and a rope datastructure to achieve

efficient operations on large Unicode buffers. Zed also features a regular

expression search on ropes.

To support efficient text edition capabilities, Zed provides macro recording

and cursor management facilities.")

    (license license:bsd-3)))

(define-public ocaml-lambda-term

  (package

    (name "ocaml-lambda-term")

    (version "1.10.1")

    (home-page "https://github.com/diml/lambda-term")

    (source (origin

              (method url-fetch)

              (uri (string-append home-page "/archive/" version ".tar.gz"))

              (sha256

               (base32

                "1449glcsavcwbcsxbd7wcjz50y8vvin4zwpmkhq8i6jca3f3sknj"))))

    (build-system ocaml-build-system)

    (propagated-inputs

     `(("zed" ,ocaml-zed)

       ("lwt" ,ocaml-lwt)

       ("react" ,ocaml-react)))

    (arguments

     `(#:phases

       (modify-phases %standard-phases

        (add-after 'install 'link-stubs

          (lambda* (#:key outputs #:allow-other-keys)

            (let* ((out (assoc-ref outputs "out"))

                   (stubs (string-append out "/lib/ocaml/site-lib/stubslibs"))

                   (lib (string-append out "/lib/ocaml/site-lib/lambda-term")))

              (mkdir-p stubs)

              (symlink (string-append lib "/dlllambda-term_stubs.so")

                       (string-append stubs "/dlllambda-term_stubs.so"))))))))

    (synopsis "Terminal manipulation library for OCaml")

    (description "Lambda-term is a cross-platform library for manipulating the

terminal. It provides an abstraction for keys, mouse events, colors, as well as

a set of widgets to write curses-like applications.

The main objective of lambda-term is to provide a higher level functional

interface to terminal manipulation than, for example, ncurses, by providing a

native OCaml interface instead of bindings to a C library.

Lambda-term integrates with zed to provide text edition facilities in console

applications.")

    (license license:bsd-3)))

(define-public ocaml-utop

  (package

    (name "ocaml-utop")

    (version "1.19.3")

    (source (origin

              (method url-fetch)

              (uri (string-append "https://github.com/diml/utop/archive/"

                                  version ".tar.gz"))

              (file-name (string-append name "-" version ".tar.gz"))

              (sha256

               (base32

                "16z02vp9n97iax4fqpbi7v86r75vbabxvnd1rirh8w2miixs1g4x"))))

    (build-system ocaml-build-system)

    (native-inputs

     `(("cppo" ,ocaml-cppo)))

    (propagated-inputs

     `(("lambda-term" ,ocaml-lambda-term)

       ("lwt" ,ocaml-lwt)

       ("react" ,ocaml-react)))

    (home-page "https://github.com/diml/utop")

    (synopsis "Universal toplevel for OCaml")

    (description "utop is an improved toplevel for OCaml.  It can run in a

terminal or in Emacs.  It supports line edition, history, real-time and context

sensitive completion, colors, and more.

It integrates with the tuareg mode in Emacs.")

    (license license:bsd-3)))

(define-public proof-general2

  (package

    (name "proof-general2")

    (version "4.4")

    (source (origin

              (method url-fetch)

              (uri (string-append

                    "https://github.com/ProofGeneral/PG/archive/v"

                    version ".tar.gz"))

              (file-name (string-append name "-" version ".tar.gz"))

              (sha256

               (base32

                "0zif2fv6mm4pv75nh10q3p37n293495rvx470bx7ma382zc3d8hv"))))

    (build-system gnu-build-system)

    (native-inputs

     `(("which" ,which)

       ("emacs" ,emacs-minimal)

       ("texinfo" ,texinfo)))

    (inputs

     `(("host-emacs" ,emacs)

       ("perl" ,perl)

       ("coq" ,coq)))

    (arguments

     `(#:tests? #f  ; no check target

       #:make-flags (list (string-append "PREFIX=" %output)

                          (string-append "DEST_PREFIX=" %output)

                          "-j1")

       #:modules ((guix build gnu-build-system)

                  (guix build utils)

                  (guix build emacs-utils))

       #:imported-modules (,@%gnu-build-system-modules

                           (guix build emacs-utils))

       #:phases

       (modify-phases %standard-phases

         (delete 'configure)

         (add-after 'unpack 'disable-byte-compile-error-on-warn

                    (lambda _

                      (substitute* "Makefile"

                        (("\\(setq byte-compile-error-on-warn t\\)")

                         "(setq byte-compile-error-on-warn nil)"))

                      #t))

         (add-after 'unpack 'patch-hardcoded-paths

                    (lambda* (#:key inputs outputs #:allow-other-keys)

                      (let ((out   (assoc-ref outputs "out"))

                            (coq   (assoc-ref inputs "coq"))

                            (emacs (assoc-ref inputs "host-emacs")))

                        (define (coq-prog name)

                          (string-append coq "/bin/" name))

                        (substitute* "pgshell/pgshell.el"

                          (("/bin/sh") (which "sh")))

                        ;(emacs-substitute-variables "coq/coq.el"

                        ;  ("coq-prog-name"           (coq-prog "coqtop"))

                        ;  ("coq-compiler"            (coq-prog "coqc"))

                        ;  ("coq-dependency-analyzer" (coq-prog "coqdep")))

                        (substitute* "Makefile"

                          (("/sbin/install-info") "install-info"))

                        (substitute* "bin/proofgeneral"

                          (("^PGHOMEDEFAULT=.*" all)

                           (string-append all

                                          "PGHOME=$PGHOMEDEFAULT\n"

                                          "EMACS=" emacs "/bin/emacs")))

                        #t))))))

         ;(add-after 'unpack 'clean

         ;           (lambda _

         ;             ;; Delete the pre-compiled elc files for Emacs 23.

         ;             (zero? (system* "make" "clean"))))

         ;(add-after 'install 'install-doc

         ;           (lambda* (#:key make-flags #:allow-other-keys)

         ;             ;; XXX FIXME avoid building/installing pdf files,

         ;             ;; due to unresolved errors building them.

         ;             (substitute* "Makefile"

         ;               ((" [^ ]*\\.pdf") ""))

         ;             (zero? (apply system* "make" "install-doc"

         ;                           make-flags)))))))

    (home-page "http://proofgeneral.inf.ed.ac.uk/")

    (synopsis "Generic front-end for proof assistants based on Emacs")

    (description

     "Proof General is a major mode to turn Emacs into an interactive proof

assistant to write formal mathematical proofs using a variety of theorem

provers.")

    (license license:gpl2+)))

(define-public ocaml-build

  (package

    (name "ocaml-build")

    (version "0.11.0")

    (source (origin

              (method url-fetch)

              (uri (string-append "https://github.com/ocaml/ocamlbuild/archive/"

                                  version ".tar.gz"))

              (file-name (string-append name "-" version ".tar.gz"))

              (sha256

               (base32

                "1vh30731gv1brr4ljfzd6m5lni44ifyb1w8hwir81ff9874fs5qp"))))

    (build-system gnu-build-system)

    (arguments

     `(#:test-target "test"

       #:tests? #f; FIXME: tests fail to find Findlib

       #:make-flags

       (list (string-append "OCAMLBUILD_PREFIX=" (assoc-ref %outputs "out"))

             (string-append "OCAMLBUILD_BINDIR=" (assoc-ref %outputs "out") "/bin")

             (string-append "OCAMLBUILD_LIBDIR=" (assoc-ref %outputs "out") "/lib")

             (string-append "OCAMLBUILD_MANDIR=" (assoc-ref %outputs "out") "/share/man"))

       #:phases

       (modify-phases %standard-phases

         (delete 'configure)

         ;(replace 'configure

         ;  (lambda* (#:key outputs #:allow-other-keys)

         ;    (let ((out (assoc-ref %outputs "out")))

         ;      (zero? (system* "make" "-f" "configure.make" "all")))))

         (add-before 'build 'findlib-environment

           (lambda* (#:key outputs #:allow-other-keys)

             (let* ((out (assoc-ref outputs "out")))

               (setenv "OCAMLFIND_DESTDIR" (string-append out "/lib/ocaml/site-lib"))

               (setenv "OCAMLFIND_LDCONF" "ignore")

               #t))))))

    (native-inputs

     `(("ocaml" ,ocaml-fix)))

    (home-page "")

    (synopsis "")

    (description "")

    (license license:lgpl2.1+)))

(define-public camlp4-fix

  (package

    (inherit camlp4)

    (name "camlp4")

    (version "4.05+2")

    (source (origin

              (method url-fetch)

              (uri (string-append "https://github.com/ocaml/camlp4/archive/"

								  version ".tar.gz"))

              (file-name (string-append name "-" version ".tar.gz"))

              (sha256

               (base32

			    "0dd9scf50y0928syvxflljwry2dzm35n903fgpfdkpcn907jq96v"))))

    (inputs `(("ocaml" ,ocaml-fix)))

    (native-inputs

     `(("ocaml" ,ocaml-fix)

       ("which" ,which)

       ("build" ,ocaml-build)))))

(define-public ocaml-findlib-fix

  (package

    (inherit ocaml-findlib)

    (native-inputs

     `(("camlp4" ,camlp4-fix)

       ("ocaml" ,ocaml-fix)

       ("m4" ,m4)))))

(define-public camlp5-fix

  (package

    (inherit camlp5)

    (name "camlp5")

    (version "7.03")

    (source (origin

              (method url-fetch)

              (uri (string-append "https://github.com/camlp5/camlp5/archive/rel"

                                  (string-delete #\. version) ".tar.gz"))

              (sha256

               (base32

                "06pj7l75r586gngam7nspd1a13ay7cj2bjh035z64w4fgaahlgf1"))))

    (inputs

     `(("ocaml" ,ocaml-fix)))))

(define-public lablgtk-fix

  (package

    (inherit lablgtk)

    (native-inputs

     `(("ocaml" ,ocaml-fix)

       ("build" ,ocaml-build)

       ("camlp4" ,camlp4-fix)

       ("findlib" ,ocaml-findlib-fix)

       ("pkg-config" ,pkg-config)))))

(define-public ocaml-menhir-fix

  (package

    (inherit ocaml-menhir)

    (version "20170607")

    (name "ocaml-menhir-fix")

    (source (origin

              (method url-fetch)

              (uri (string-append

                    "http://gallium.inria.fr/~fpottier/menhir/"

                    "menhir-" version ".tar.gz"))

              (sha256

               (base32

                "0qffci9qxgfabzyalx851q994yykl4n9ylr4vbplsm6is1padjh0"))))

    (inputs

     `(("ocaml" ,ocaml-fix)

       ("ocamlbuild" ,ocaml-build)))))

(define-public coq-fix

  (package

    (inherit coq)

    (native-inputs

     `(("ocamlbuild" ,ocaml-build)

       ("hevea" ,hevea)

       ("texlive" ,texlive)))

    (inputs

     `(("lablgtk" ,lablgtk-fix)

       ("python" ,python-2)

       ("camlp5" ,camlp5-fix)))

    (arguments

     `(#:ocaml ,ocaml-fix

       #:findlib ,ocaml-findlib-fix

       ,@(package-arguments coq)))))

(define-public compcert

  (package

    (name "compcert")

    (version "3.0.1")

    (source (origin

              (method url-fetch)

              (uri (string-append "http://compcert.inria.fr/release/compcert-"

                                  version ".tgz"))

              (sha256

               (base32

                "0dgrj26dzdy4n3s9b5hwc6lm54vans1v4qx9hdp1q8w1qqcdriq9"))))

    (build-system gnu-build-system)

    (arguments

     `(#:phases

       (modify-phases %standard-phases

         (replace 'configure

           (lambda* (#:key outputs #:allow-other-keys)

             (zero? (system* "./configure" "x86_64-linux" "-prefix"

                             (assoc-ref outputs "out"))))))

       #:tests? #f))

    (native-inputs

     `(("ocaml" ,ocaml-fix)

       ("coq" ,coq-fix)))

    (inputs

     `(("menhir" ,ocaml-menhir-fix)))

    (home-page "http://compcert.inria.fr")

    (synopsis "Certified C compiler")

    (description "CompCert is a certified (with coq) C compiler.  Warning: this

package is not free software!")

    ;; actually the "INRIA Non-Commercial License Agreement"

    ;; a non-free license.

    (license (license:non-copyleft "file:///LICENSE"))))

(define-public cubicle

  (package

    (name "cubicle")

    (version "1.1.1")

    (source (origin

              (method url-fetch)

              (uri (string-append "http://cubicle.lri.fr/cubicle-"

                                  version ".tar.gz"))

              (sha256

               (base32

                "1sny9c4fm14k014pk62ibpwbrjjirkx8xmhs9jg7q1hk7y7x3q2h"))))

    (build-system gnu-build-system)

    (native-inputs

     `(("ocaml" ,ocaml)

       ("which" ,which)))

    (propagated-inputs

     `(("z3" ,z3)))

    (arguments

     `(#:configure-flags (list "--with-z3")

       #:tests? #f

       #:phases

       (modify-phases %standard-phases

         (add-before 'configure 'configure-for-release

           (lambda _

             (substitute* "Makefile.in"

               (("SVNREV=") "#SVNREV="))))

         (add-before 'configure 'fix-/bin/sh

           (lambda _

             (substitute* "configure"

               (("/bin/sh") (which "sh")))))

         (add-before 'configure 'fix-smt-z3wrapper.ml

           (lambda _

             (substitute* "Makefile.in"

               (("\\\\n") "")))))))

    (home-page "http://cubicle.lri.fr/")

    (synopsis "Model checker for array-based systems")

    (description "Cubicle is an open source model checker for verifying safety

properties of array-based systems.  This is a syntactically restricted class of

parametrized transition systems with states represented as arrays indexed by an

arbitrary number of processes.  Cache coherence protocols and mutual exclusion

algorithms are typical examples of such systems.")

    (license license:asl2.0)))

(define-public ocaml-c2newspeak

  (package

    (name "ocaml-c2newspeak")

    (version "1")

    (source (origin

              (method git-fetch)

              (uri (git-reference

                     (url "https://github.com/airbus-seclab/c2newspeak")

                     (commit "6f7adf13fefb7f8d4dc668b8290226e3c6a30063")))

              (file-name (string-append name "-" version))

              (sha256

               (base32

                "1apaz0b84865xfba0mxbskbnaq6llqsn3qhy8b0sssbdxzw5w1x4"))))

    (build-system ocaml-build-system)

    (arguments

     `(#:test-target "check"

       #:tests? #f

       #:phases

       (modify-phases %standard-phases

         (delete 'configure)

         (add-before 'install 'modify-installed-file-list

           (lambda _

             (substitute* "src/newspeak.Makefile"

               (("c2newspeak/typedC.cmi")

                "c2newspeak/typedC.cmi c2newspeak/typedC.cmx c2newspeak/typedC.o"))))

         (add-after 'install 'install-bin

           (lambda* (#:key outputs #:allow-other-keys)

             (install-file "bin/c2newspeak" (string-append (assoc-ref outputs "out") "/bin")))))))

    (home-page "https://github.com/airbus-seclab/c2newspeak")

    (synopsis "")

    (description "")

    (license license:lgpl2.1+)))

(define-public ocaml-bincat

  (package

    (name "ocaml-bincat")

    (version "0.6")

    (source (origin

              (method url-fetch)

              (uri (string-append "https://github.com/airbus-seclab/bincat/archive/v"

                                  version ".tar.gz"))

              (file-name (string-append name "-" version ".tar.gz"))

              (sha256

               (base32

                "1762wrvf7fv16kxfvpblj4b0pwbwny1b39263q4jnqni12474djl"))))

    (build-system ocaml-build-system)

    (arguments

     `(#:tests? #f; some failures for unknown reasons

       #:make-flags

       (list (string-append "PREFIX=" (assoc-ref %outputs "out"))

             "LDCONFIG=true"

             (string-append "CFLAGS+=-I " (assoc-ref %build-inputs "ocaml")

                            "/lib/ocaml"))

       #:phases

       (modify-phases %standard-phases

         (delete 'configure)

         (add-before 'build 'python-path

           (lambda _

             (setenv "PYTHONPATH" (string-append (getenv "PYTHONPATH")

                                                 ":../python"))))

         (add-before 'build 'fix-makefile

           (lambda _

             (substitute* "ocaml/src/Makefile"

               (("GITVERSION:=.*") "GITVERSION:=0.6\n")

               ;; typedC library is embedded in newspeak.cmxa

               (("typedC.cmx") ""))))

         (add-before 'check 'fix-test

           (lambda _

             (setenv "PATH" (string-append (getenv "PATH") ":" (getcwd) "/ocaml/src"))

             (chmod "test/eggloader_x86" #o755))))))

    (inputs

     `(("c2newspeak" ,ocaml-c2newspeak)

       ("zarith" ,ocaml-zarith)

       ("menhir" ,ocaml-menhir)

       ("ocamlgraph" ,ocaml-graph)

       ("gmp" ,gmp)))

    (native-inputs

     `(("python" ,python-2)

       ("pytest" ,python2-pytest)

       ("sphinx" ,python2-sphinx)

       ("nasm" ,nasm)))

    (home-page "https://github.com/airbus-seclab/bincat")

    (synopsis "")

    (description "")

    (license license:lgpl2.1+)))